download and unzip these files(There are hidden files/directories)
Note: Make sure that the etc/skel/.bashrc from the zip file was already deployed as root and that /etc/skel/.bashrc was copied to your home dir when it was created( cp /etc/skel/.bashrc ~ ). If your .bashrc does not have the stuff from the template, you can add it manually and notify an admin to deploy the template in /etc/skel/.
create folder where the modules will be
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mkdir /apps/modules/
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###copy all files in the folder /apps/modules/ from the zip to the server (if /apps/modules is not possible, NB the copying of these files should go somewhere else)
NB: Lmod must already have been deployed as root using your Linux distro's package manager.NB2: if apps modules is not possible then ~/.bashrc should also be changed
If lmod is not installed, please do the following (admins-only) in our case for CentOS use
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$root>: yum install lmod
Copied!
To verify /apps/modules/modules.bashrc gets sourced: logout + login. When ${HPC_ENV_PREFIX} is set your are good to continue to the next step.
The following packages should be on the cluster/VM (this can only done with root access:
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yum install libibverbs-devel
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yum install openssl-devel
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yum installunzip
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yum install libX11-devel
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yum install libXrender-devel
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yum install libXext-devel
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yum install mesa-libGL-devel
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yum install mesa-libGLU-devel
Copied!
8a) Get molgenis-easybuild repo
Now that easybuild is installed we have to have the molgenis easybuild configs because it contains a lot of custom easyconfigs that are (sometimes were at the moment we began with this) not in the original easybuild repo from Ghent University: https://github.com/molgenis/easybuild-easyconfigs
There are 2 options:
Fork this repo to your own repo and then do a git clone (on the cluster, then you can skip 8b)