molgenis
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  • Introduction
    • What is MOLGENIS
    • Try out MOLGENIS
    • Quick start (docker)
  • Find, view, query
    • Using the navigator
    • Using the search-all
    • Using the dataexplorer
    • Setup authentication
  • Data management
    • EMX format
    • Using expressions in EMX
    • Quickly import data
    • Advanced data import
    • Modify metadata
    • Questionnaires
    • Downloading data
    • MagmaScript expressions (mapping service)
    • Pseudonymisation
  • Access control
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    • Groups and roles
    • Finegrained permissions
    • Set permissions on row level (RLS)
  • Data processing
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    • R
    • Schedule jobs
  • Configuration
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    • Apps in MOLGENIS
    • Creating themes
    • Migration
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    • Swagger specification
    • Data API
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    • REST api v1
    • REST api v2
    • Files api
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    • Permission api
    • Python-api client
    • R-api client
    • Beacon api
    • FAIR api
    • RSQL operators
    • Biobank Directory
  • For developers
    • Developing MOLGENIS
    • Developing frontend in MOLGENIS
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    • Using an IDE (Intellij)
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    • Dynamic decorators
    • Running the integration tests
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  • Deploy MOLGENIS
    • Using RPM
    • Technical Migration
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  1. Data management

Downloading data

PreviousQuestionnairesNextMagmaScript expressions (mapping service)

Last updated 5 years ago

To enable batch downloads from the commandline, MOLGENIS provides a EMX download tool. The tool can be downloaded from . A readme providing basic usage and options is provided .

here
here